plotHeatmap

This function generates a heatmap that visualises the similarity between shared 
groups across batches, as computed by <code>getIDEr</code>.

A workflow of (a) meta-clustering based on
inter-group similarity measures and (b) a ground-truth-free test metric to
assess the biological correctness of integration in real datasets. See Hu Z,
Ahmed A, Yau C (2021) <doi:10.1101/2021.03.29.437525> for
more details.

Zhiyuan Hu

CIDER

Meta-Clustering for scRNA-Seq Integration and Evaluation

Christopher Yau

Ahmed Ahmed

plotHeatmap function

<dl><dt>seu</dt>
<dd>A Seurat object.</dd>
<dt>ider</dt>
<dd>The output list from the <code>getIDEr</code> function.</dd>
<dt>batch.var</dt>
<dd>Character string specifying the metadata column that contains batch information. Default is "Batch".</dd></dl>

Arguments

Plot Heatmap for the IDER-Based Similarity Matrix — plotHeatmap

<dl>

<dt>seu</dt>
<dd>A Seurat object.</dd>


<dt>ider</dt>
<dd>The output list from the <code>getIDEr</code> function.</dd>


<dt>batch.var</dt>
<dd>Character string specifying the metadata column that contains batch information. Default is "Batch".</dd>

</dl>

plotHeatmap: Plot Heatmap for the IDER-Based Similarity Matrix

Description

Usage

Value

Arguments

See Also