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CMplot (version 4.5.1)

Circle Manhattan Plot

Description

Manhattan plot, a type of scatter plot, was widely used to display the association results. However, it is usually time-consuming and laborious for a non-specialist user to write scripts and adjust parameters of an elaborate plot. Moreover, the ever-growing traits measured have necessitated the integration of results from different Genome-wide association study researches. Circle Manhattan Plot is the first open R package that can lay out. Genome-wide association study P-value results in both traditional rectangular patterns, QQ-plot and novel circular ones. United in only one bull's eye style plot, association results from multiple traits can be compared interactively, thereby to reveal both similarities and differences between signals. Additional functions include: highlight signals, a group of SNPs, chromosome visualization and candidate genes around SNPs.

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Install

install.packages('CMplot')

Monthly Downloads

2,602

Version

4.5.1

License

GPL (>= 2)

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Maintainer

LiLinYin

Last Published

January 19th, 2024

Functions in CMplot (4.5.1)

pig60K

Genotyped by pig 60k chip
CMplot-package

Circle Manhattan Plot
cattle50K

Genotyped by Bovine50K chip