COCONUT (version 1.0.1)

GSEs.test: COCONUT test data

Description

A list of lists, specifically, a list of three data objects (GSEs) from the NIH GEO repository. Each has been converted from a probe matrix to a gene matrix, and subsetted to have only 10 samples (5 healthy and 5 diseased) with only 2000 genes.

Usage

data(GSEs.test)

Format

A list of lists. Within the list, each named object consists of:

genes

a numeric matrix, gene names in rows and sample IDs in columns.

pheno

a data.frame, with sample IDs in rows and phenotype variables in columns.

Source

http://www.ncbi.nlm.nih.gov/geo/

Details

The data all come from the NIH GEO repository, and are subsets of their respective GSE IDs.

Examples

## see help(COCONUT) for further example
data(GSEs.test)
str(GSEs.test)