COMBIA (version 1.0.6)

readFMCAValues: Read data from raw FMCA format and clean for outliers

Description

Read data from raw FMCA format and clean for outliers

Usage

readFMCAValues(file, platetype, keyposition, selectionkey, platekey, wells,
  minThersholdForCVCal, minThersholdForCV, yConcentration, xConcentration)

Arguments

file

Name of file to be read

platetype

384 etc

keyposition

Bar code position

selectionkey

65000

platekey

Barcode

wells

Wells ranges

minThersholdForCVCal

Thresolld for data outliears in CV

minThersholdForCV

Thresold of values in CV not to remove

yConcentration

Concentrations of y drug

xConcentration

Concentrations of x drug

Value

Matrix of replicated survival values

Examples

# NOT RUN {
fl <- system.file("extdata","FluoOptima_384_2014-03-28test.txt", package="COMBIA")
wls <- list(c("A11:H11", "A12:H12","A1:H10",   "I11:P11", "I12:P12","I1:P10", 
        "A23:H23", "A24:H24","A13:H22",   "I23:P23", "I24:P24","I13:P22")
                        )
pltype <- "384"
keypos <- 2     
seleckey <- "65000"
barCode <- 7049
minThersholdForCVCal <- 0.1 
minThersholdForCV <- 0.3
xConc <- c(0.00,  0.20,  0.39,0.78,  1.56,  3.12,  6.25, 12.50, 25.00, 50.00) 
yConc <- c(128,  64,  32,  16,   8,   4,   2,   0)
readFMCAValues(fl, pltype, keypos, seleckey, barCode,
              wls, minThersholdForCVCal, minThersholdForCV, xConc, yConc   )
# }