COMBIA (version 1.0.6)

readMacSynergyValues: Read data from macsynergyII formate and clean for outliers

Description

Read data from macsynergyII formate and clean for outliers

Usage

readMacSynergyValues(file, sheet, nrow = 41, wellRangesExcel,
  minThersholdForCVCal, minThersholdForCV, survivalFunc)

Arguments

file

Name of fiele to be read

sheet

Sheet Number

nrow

Number of rows in the sheet

wellRangesExcel

TRUE if wells in excel formate

minThersholdForCVCal

Thresolld for data outliears in CV

minThersholdForCV

Thresold of values in CV not to remove

survivalFunc

<- function (x,y,z) (x-z)/(y-z) # It can be any function

Value

Matrix of replicated values

Examples

# NOT RUN {
fl <- system.file("extdata", "testData.csv", package="COMBIA")
sh <- 1
wellR <- list(c( "l3:l10","m3:m10","b3:k10",  "l13:l20","m13:m20","b13:k20", 
           "l23:l30","m23:m30","b23:k30",  "l33:l40","m33:m40","b33:k40"))
minThersholdForCV <- 0.3
minThersholdForCVCal <- 0.1
survivalFunc <-  function (x,y,z) {(x-z)/(y-z)}
rslt <- readMacSynergyValues(fl, sh, nrow=41, wellR,  
minThersholdForCVCal, minThersholdForCV, survivalFunc)
# }