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Cardinal (version 1.4.0)

ResultSet-class: Class to Contain Analysis Results for Imaging Experiments

Description

This class is used as a return value by most of the analysis methods provided by Cardinal, including PCA, PLS, OPLS, spatialKMeans, spatialShrunkenCentroids.

Arguments

Slots

imageData:
This slot is unused in a ResultSet.
pixelData:
The pixelData from the analyzed dataset.
featureData:
The featureData from the analyzed dataset.
experimentData:
The experimentData from the analyzed dataset.
protocolData:
The protocolData from the analyzed dataset.
resultData:
A list of analysis results. Each element contains the results from a different parameter set.
modelData:
An AnnotatedDataFrame containing information about the parameters of the models in resultData.
.__classVersion__:
A Versions object describing the version of the class used to created the instance. Intended for developer use.

Extends

iSet, directly. VersionedBiobase, by class "iSet", distance 1. Versioned, by class "VersionedBiobase", distance 2.

Creating Objects

ResultSet is a virtual class. No instances can be created.

Methods

Class-specific methods:
resultData(object):
Access and set the results of the analyses.
modelData(object):
Access and set the model parameters.
Standard generic methods:
length(x):
Access the number of elements of resultData.
names(x):
Access the names of the components of all of the elements of resultData.
ResultSet$name:
Access all of the result components with the name name.
ResultSet[[i, ...]]:
Access ith element of the resultData slot.
ResultSet[i, j, ..., drop]:
Subset an ResultSet based on the model parameters in modelData.
See iSet for additional methods.

See Also

iSet, PCA, PLS, OPLS, spatialKMeans, spatialShrunkenCentroids