CellChat (version 1.0.0)

computeNetSimilarityPairwise: Compute signaling network similarity for any pair of datasets

Description

Compute signaling network similarity for any pair of datasets

Usage

computeNetSimilarityPairwise(
  object,
  slot.name = "netP",
  type = c("functional", "structural"),
  comparison = NULL,
  k = NULL,
  thresh = NULL
)

Arguments

object

A merged CellChat object

slot.name

the slot name of object that is used to compute centrality measures of signaling networks

type

"functional","structural"

comparison

a numerical vector giving the datasets for comparison

k

the number of nearest neighbors

thresh

the fraction (0 to 0.25) of interactions to be trimmed before computing network similarity

Value