CellChat (version 1.0.0)

identifyCommunicationPatterns: Identification of major signals for specific cell groups and general communication patterns

Description

Identification of major signals for specific cell groups and general communication patterns

Usage

identifyCommunicationPatterns(
  object,
  slot.name = "netP",
  pattern = c("outgoing", "incoming"),
  k = NULL,
  k.range = seq(2, 10),
  heatmap.show = TRUE,
  color.use = NULL,
  color.heatmap = "Spectral",
  title.legend = "Contributions",
  width = 4,
  height = 6,
  font.size = 8
)

Arguments

object

CellChat object

slot.name

the slot name of object that is used to compute centrality measures of signaling networks

pattern

"outgoing" or "incoming"

k

the number of patterns

k.range

a range of the number of patterns

heatmap.show

whether showing heatmap

color.use

the character vector defining the color of each cell group

color.heatmap

a color name in brewer.pal

title.legend

the title of legend in heatmap

width

width of heatmap

height

height of heatmap

font.size

fontsize in heatmap

Value