CellChat (version 1.0.0)

identifyEnrichedInteractions: Identify all the significant interactions (L-R pairs) from some cell groups to other cell groups

Description

Identify all the significant interactions (L-R pairs) from some cell groups to other cell groups

Usage

identifyEnrichedInteractions(
  object,
  from,
  to,
  bidirection = FALSE,
  pair.only = TRUE,
  pairLR.use0 = NULL,
  thresh = 0.05
)

Arguments

object

CellChat object

from

a vector giving the index or the name of source cell groups

to

a corresponding vector giving the index or the name of target cell groups. Note: The length of 'from' and 'to' must be the same, giving the corresponding pair of cell groups for communication.

bidirection

whether show the bidirectional communication, i.e., both 'from'->'to' and 'to'->'from'.

pair.only

whether only return ligand-receptor pairs without pathway names and communication strength

pairLR.use0

ligand-receptor pairs to use; default is all the significant interactions

thresh

threshold of the p-value for determining significant interaction

Value