CellChat (version 1.0.0)

identifyOverExpressedInteractions: Identify over-expressed ligand-receptor interactions (pairs) within the used CellChatDB

Description

Identify over-expressed ligand-receptor interactions (pairs) within the used CellChatDB

Usage

identifyOverExpressedInteractions(
  object,
  features.name = "features",
  features = NULL,
  return.object = TRUE
)

Arguments

object

CellChat object

features.name

a char name used for assess the results in `[e-mail][[features.name]]`

features

a vector of features to use. default use all over-expressed genes in `[e-mail][[features.name]]`

return.object

whether returning a CellChat object. If FALSE, it will return a data frame containing the over-expressed ligand-receptor pairs

Value

A CellChat object or a data frame. If returning a CellChat object, a new element named 'LRsig' will be added into the list `object@LR`