CellChat (version 1.0.0)

netAnalysis_contribution: Compute and visualize the contribution of each ligand-receptor pair in the overall signaling pathways

Description

Compute and visualize the contribution of each ligand-receptor pair in the overall signaling pathways

Usage

netAnalysis_contribution(
  object,
  signaling,
  signaling.name = NULL,
  width = 0.1,
  vertex.receiver = NULL,
  thresh = 0.05,
  return.data = FALSE,
  x.rotation = 0,
  title = "Contribution of each L-R pair",
  font.size = 10,
  font.size.title = 10
)

Arguments

object

CellChat object

signaling

a signaling pathway name

signaling.name

alternative signaling pathway name to show on the plot

width

the width of individual bar

vertex.receiver

a numeric vector giving the index of the cell groups as targets in the first hierarchy plot

thresh

threshold of the p-value for determining significant interaction

return.data

whether return the data.frame consisting of the predicted L-R pairs and their contribution

x.rotation

rotation of x-label

title

the title of the plot

font.size

font size of the text

font.size.title

font size of the title

Value