CellChat (version 1.0.0)

netAnalysis_signalingRole_network: Heatmap showing the centrality scores/importance of cell groups as senders, receivers, mediators and influencers in a single intercellular communication network

Description

Heatmap showing the centrality scores/importance of cell groups as senders, receivers, mediators and influencers in a single intercellular communication network

Usage

netAnalysis_signalingRole_network(
  object,
  signaling,
  slot.name = "netP",
  measure = c("outdeg", "indeg", "flowbet", "info"),
  measure.name = c("Sender", "Receiver", "Mediator", "Influencer"),
  color.use = NULL,
  color.heatmap = "BuGn",
  width = 6.5,
  height = 1.4,
  font.size = 8,
  font.size.title = 10,
  cluster.rows = FALSE,
  cluster.cols = FALSE
)

Arguments

object

CellChat object

signaling

a character vector giving the name of signaling networks

slot.name

the slot name of object that is used to compute centrality measures of signaling networks

measure

centrality measures to show

measure.name

the names of centrality measures to show

color.use

the character vector defining the color of each cell group

color.heatmap

a color name in brewer.pal

width

width of heatmap

height

height of heatmap

font.size

fontsize in heatmap

font.size.title

font size of the title

cluster.rows

whether cluster rows

cluster.cols

whether cluster columns

Value