CellChat (version 1.0.0)

netMappingDEG: Mapping the differential expressed genes (DEG) information onto the inferred cell-cell communications

Description

This function returns a data frame consisting of all the inferred cell-cell communications with mapped DEG information

Usage

netMappingDEG(object, features.name, thresh = 0.05)

Arguments

object

CellChat object

features.name

a char name used for extracting the DEG in `[e-mail][[features.name]]`

thresh

threshold of the p-value for determining significant interaction

Value

a data frame of the inferred cell-cell communications, consisting of source, target, interaction_name, pathway_name, prob and other CellChatDB information as well as DEG information