CellChat (version 1.0.0)

netVisual_embeddingZoomIn: Zoom into the 2D visualization of the learned manifold learning of the signaling networks

Description

Zoom into the 2D visualization of the learned manifold learning of the signaling networks

Usage

netVisual_embeddingZoomIn(
  object,
  slot.name = "netP",
  type = c("functional", "structural"),
  color.use = NULL,
  pathway.remove = NULL,
  nCol = 1,
  dot.size = c(2, 6),
  label.size = 2.8,
  dot.alpha = 0.5,
  xlabel = NULL,
  ylabel = NULL,
  do.label = T,
  show.legend = F,
  show.axes = T
)

Arguments

object

CellChat object

slot.name

the slot name of object that is used to compute centrality measures of signaling networks

type

"functional","structural"

color.use

defining the color for each cell group

pathway.remove

a character vector defining the signaling to remove

nCol

the number of columns of the plot

dot.size

a range defining the size of the symbol

label.size

font size of the text

dot.alpha

transparency

xlabel

label of x-axis

ylabel

label of y-axis

do.label

label the each point

show.legend

whether show the legend

show.axes

whether show the axes

Value