# \dontshow{
n<-10 ### sample size for estimation.
n1=1 ### number of observation used in the prediction.
###simulated coordinates
r1=sample(seq(1,30,length=400),n+n1)
r2=sample(seq(1,30,length=400),n+n1)
coords=cbind(r1,r2)
coords1=coords[1:n,]
type="matern"
#xtot<-cbind(1,runif((n+n1)),runif((n+n1),2,3))
xtot=as.matrix(rep(1,(n+n1)))
xobs=xtot[1:n,]
beta=5
#beta=c(5,3,1)
###simulated data
obj=rspacens(cov.pars=c(3,.3,0),beta=beta,x=xtot,coords=coords,kappa=1.2,
cens=0.25,n=(n+n1),n1=n1,cov.model=type,cens.type="left")
data2=obj$datare
cc=obj$cc
y=obj$datare[,3]
coords=obj$datare[,1:2]
##initials values obtained from variofit.
cov.ini=c(0.13,0.86)
est=SAEMSCL(cc,y,cens.type="left",trend="cte",coords=coords,
kappa=1.2,M=15,perc=0.25,MaxIter=10,pc=0.2,cov.model=type,
fix.nugget=TRUE,nugget=0,inits.sigmae=cov.ini[1],
inits.phi=cov.ini[2],search=TRUE,lower=0.00001,upper=100)
summary(est)
# }
# \donttest{
n<-200 ### sample size for estimation.
n1=50 ### number of observation used in the prediction.
###simulated coordinates
r1=sample(seq(1,30,length=400),n+n1)
r2=sample(seq(1,30,length=400),n+n1)
coords=cbind(r1,r2)
coords1=coords[1:n,]
type="matern"
#xtot<-cbind(1,runif((n+n1)),runif((n+n1),2,3))
xtot=as.matrix(rep(1,(n+n1)))
xobs=xtot[1:n,]
beta=5
#beta=c(5,3,1)
###simulated data
obj=rspacens(cov.pars=c(3,.3,0),beta=beta,x=xtot,coords=coords,kappa=1.2,
cens=0.25,n=(n+n1),n1=n1,cov.model=type,cens.type="left")
data2=obj$datare
cc=obj$cc
y=obj$datare[,3]
coords=obj$datare[,1:2]
est=SAEMSCL(cc,y,cens.type="left",trend="cte",coords=coords,
kappa=1.2,M=15,perc=0.25,MaxIter=10,pc=0.2,cov.model=type,
fix.nugget=TRUE,nugget=0,inits.sigmae=cov.ini[1],
inits.phi=cov.ini[2],search=TRUE,lower=0.00001,upper=100)
summary(est)
# }
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