Peaks.Ste12.Replicate2


 Ste12-binding sites from biological replicate 2 in yeast (see reference)


datasets

The package includes functions to retrieve the sequences
around the peak, obtain enriched Gene Ontology (GO) terms, find
the nearest gene, exon, miRNA or custom features such as most
conserved elements and other transcription factor binding sites
supplied by users. Starting 2.0.5, new functions have been
added for finding the peaks with bi-directional promoters with
summary statistics (peaksNearBDP), for summarizing the
occurrence of motifs in peaks (summarizePatternInPeaks) and for
adding other IDs to annotated peaks or enrichedGO (addGeneIDs).
This package leverages the biomaRt, IRanges, Biostrings,
BSgenome, GO.db, multtest and stat packages.

Lihua Julie Zhu

ChIPpeakAnno

Batch annotation of the peaks identified from either ChIP-seq,
ChIP-chip experiments or any experiments resulted in large
number of chromosome ranges

Peaks.Ste12.Replicate2 function

RangedData with slot rownames containing the ID of peak as character, slot 
    start containing the start position of the peak, slot end containing the 
    end position of the peak and space containing the chromosome where the 
    peak is located.

Format

http://www.biomedcentral.com/1471-2164/10/37

Peaks.Ste12.Replicate2: Ste12-binding sites from biological replicate 2 in yeast (see reference)

Description

Usage

Arguments

Format

Source

References

Examples