ChIPpeakAnno (version 3.6.5)

enrichedGO: Enriched Gene Ontology terms used as example

Description

Enriched Gene Ontology terms used as example

Usage

data(enrichedGO)

Format

A list of 3 dataframes.

bp

dataframe described the enriched biological process with 9 columns go.id:GO biological process id go.term:GO biological process term go.Definition:GO biological process description Ontology: Ontology branch, i.e. BP for biological process count.InDataset: count of this GO term in this dataset count.InGenome: count of this GO term in the genome pvalue: pvalue from the hypergeometric test totaltermInDataset: count of all GO terms in this dataset totaltermInGenome: count of all GO terms in the genome

mf

dataframe described the enriched molecular function with the following 9 columns go.id:GO molecular function id go.term:GO molecular function term go.Definition:GO molecular function description Ontology: Ontology branch, i.e. MF for molecular function count.InDataset: count of this GO term in this dataset count.InGenome: count of this GO term in the genome pvalue: pvalue from the hypergeometric test totaltermInDataset: count of all GO terms in this dataset totaltermInGenome: count of all GO terms in the genome

cc

dataframe described the enriched cellular component the following 9 columns go.id:GO cellular component id go.term:GO cellular component term go.Definition:GO cellular component description Ontology: Ontology type, i.e. CC for cellular component count.InDataset: count of this GO term in this dataset count.InGenome: count of this GO term in the genome pvalue: pvalue from the hypergeometric test totaltermInDataset: count of all GO terms in this dataset totaltermInGenome: count of all GO terms in the genome

Examples

data(enrichedGO)
dim(enrichedGO$mf)
dim(enrichedGO$cc)
dim(enrichedGO$bp)