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ChemmineR (version 2.24.2)

canonicalize: Canonicalize

Description

Canonicalizes the atom numbering of a compound. The implimentation of this function is in Open Babel and requires the ChemmineOB package to function.

Usage

canonicalize(sdf)

Arguments

sdf
Any sdfset object.

Value

A new SDFset in which all compounds have been canonicalized

References

http://openbabel.org/api/2.3/canonical_code_algorithm.shtml

See Also

canonicalNumbering

Examples

Run this code
	data(sdfsample)
	canonicalSdf = canonicalize(sdfsample[1])

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