Chicago (version 1.0.3)

readSample: Read Sample

Description

This function reads input data from a file, into a chicagoData object.

Usage

readSample(file, cd)

Arguments

file

The location of an input file FIXME more details!

cd

A chicagoData object.

Value

An object of class chicagoData.

Warning

The object intData(x) is updated by reference. Thus, intData(cd) will be altered. See vignette for further information.

Examples

filesDir <- file.path(system.file("extdata", package="Chicago"), "unitTestData")
file <- file.path(filesDir, dir(filesDir))[1]
print(file) ##we will read in this file

designDir <- file.path(system.file("extdata", package="Chicago"), "unitTestDesign")

cd <- setExperiment(designDir=designDir)
cd <- readAndMerge(file, cd)