plot.MultiChannelClusters

Plot multi-channel clustering results returned from <code>MultiChannel.WUC</code>.

 distribution

 cluster

 hplot

Fast, optimal, and reproducible weighted univariate
clustering by dynamic programming. Four problems are solved, including
univariate k-means (Wang & Song 2011) <doi:10.32614/RJ-2011-015>
(Song & Zhong 2020) <doi:10.1093/bioinformatics/btaa613>, k-median,
k-segments, and multi-channel weighted k-means. Dynamic programming
is used to minimize the sum of (weighted) within-cluster distances
using respective metrics. Its advantage over heuristic clustering in
efficiency and accuracy is pronounced when there are many clusters.
Multi-channel weighted k-means groups multiple univariate
signals into k clusters. An auxiliary function generates histograms
adaptive to patterns in data. This package provides a powerful set
of tools for univariate data analysis with guaranteed optimality,
efficiency, and reproducibility, useful for peak calling on temporal,
spatial, and spectral data.

Joe Song

Ckmeans.1d.dp

Optimal, Fast, and Reproducible Univariate Clustering

Hua Zhong

Haizhou Wang

plot.MultiChannelClusters function

<dl> <dt>x</dt>
<dd>an object of class as returned by <code>MultiChannel.WUC</code>.</dd>
 <dt>xlab</dt>
<dd>a character string. The x-axis label for the plot.</dd>
 <dt>ylab</dt>
<dd>a character string. The x-axis label for the plot.</dd>
 <dt>main</dt>
<dd>a character string. The title for the plot.</dd>
 <dt>sub</dt>
<dd>a character string. The subtitle for the plot.</dd>
 <dt>col.clusters</dt>
<dd>a vector of colors, defined either by integers or by color names. If the length is shorter than the number of clusters, the colors will be reused.</dd>
 <dt>...</dt>
<dd>arguments passed to <code><a href="/link/plot?package=Ckmeans.1d.dp&version=4.3.5" data-mini-rdoc="Ckmeans.1d.dp::plot">plot</a></code> function in package graphics.</dd></dl>

Arguments

Author

Plot Multi-Channel Clustering Results — plot.MultiChannelClusters

<dl>

 <dt>x</dt>
<dd>an object of class as returned by <code>MultiChannel.WUC</code>.</dd>


 <dt>xlab</dt>
<dd>a character string. The x-axis label for the plot.</dd>


 <dt>ylab</dt>
<dd>a character string. The x-axis label for the plot.</dd>


 <dt>main</dt>
<dd>a character string. The title for the plot.</dd>


 <dt>sub</dt>
<dd>a character string. The subtitle for the plot.</dd>


 <dt>col.clusters</dt>
<dd>a vector of colors, defined either by integers or by color names. If the length is shorter than the number of clusters, the colors will be reused.</dd>


 <dt>...</dt>
<dd>arguments passed to <code><a href='https://rdrr.io/r/graphics/plot.default.html'>plot</a></code> function in package graphics.</dd>

</dl>

plot.MultiChannelClusters: Plot Multi-Channel Clustering Results

Description

Usage

Value

Arguments

Author

Details