BumSummary

BumSummary-class

show,BumSummary-method

An implementation class. Users are not expected to create these objects
 directly; they are produced as return objects from the summary method for
 <code>Bum</code>.

classes

Defines the classes used for "class comparison" problems
in the OOMPA project (<http://oompa.r-forge.r-project.org/>). Class
comparison includes tests for differential expression; see Simon's
book for details on typical problem types.

Kevin Coombes

ClassComparison

Classes and Methods for "Class Comparison" Problems on
Microarrays

BumSummary-class function

<dl class="dl-horizontal">
 <dt><code>bum</code>:</dt><dd>object of class <code>Bum</code></dd>
 <dt><code>estimates</code>:</dt><dd>data.frame</dd>
 <dt><code>Fhat</code>:</dt><dd>numeric</dd>
 </dl>

Slots

<dl class="dl-horizontal">
 <dt>show</dt><dd><code>signature(object = "BumSummary")</code>: Print the
 object, which contains a summary of the underlying <code>Bum</code>
 object. The summary contains a data frame with estimates of the
 fraction of true positives (TP), false positives (FP), true negatives
 (TN) and false negatives (FN) at the set of p-value cutoffs
 specified in the call to the summary method.</dd>
 </dl>

Methods

Class "BumSummary" — BumSummary-class

<dl class='dl-horizontal'>
 <dt><code>bum</code>:</dt><dd>object of class <code>Bum</code></dd>
 <dt><code>estimates</code>:</dt><dd>data.frame</dd>
 <dt><code>Fhat</code>:</dt><dd>numeric</dd>
 </dl>

<dl class='dl-horizontal'>
 <dt>show</dt><dd><code>signature(object = "BumSummary")</code>: Print the
 object, which contains a summary of the underlying <code>Bum</code>
 object. The summary contains a data frame with estimates of the
 fraction of true positives (TP), false positives (FP), true negatives
 (TN) and false negatives (FN) at the set of p-value cutoffs
 specified in the call to the summary method.</dd>
 </dl>

BumSummary-class: Class "BumSummary"

Description

Arguments

Slots

Methods

See Also

Examples