pseudotime

Generic to extract pseudotime from CDS object

Streamlining the clustering and visualization of time-series gene expression data from RNA-Seq experiments, this tool supports fuzzy c-means and k-means clustering algorithms. It is compatible with outputs from widely-used packages such as 'Seurat', 'Monocle', and 'WGCNA', enabling seamless downstream visualization and analysis. See Lokesh Kumar and Matthias E Futschik (2007) <doi:10.6026/97320630002005> for more details.

Junjun Lao

ClusterGVis

One-Step to Cluster and Visualize Gene Expression Data

Jun Zhang

pseudotime function

<dl><dt>x</dt>
<dd>A cell_data_set object.</dd>
<dt>reduction_method</dt>
<dd>Reduced dimension to extract pseudotime for.</dd></dl>

Arguments

https://github.com/cole-trapnell-lab/monocle3

Author

Generic to extract pseudotime from CDS object — pseudotime

<dl>

<dt>x</dt>
<dd>A cell_data_set object.</dd>


<dt>reduction_method</dt>
<dd>Reduced dimension to extract pseudotime for.</dd>

</dl>

pseudotime: Generic to extract pseudotime from CDS object

Description

Usage

Value

Arguments

Author