ComplexHeatmap (version 1.10.2)

anno_boxplot: Using boxplot as annotation

Description

Using boxplot as annotation

Usage

anno_boxplot(x, which = c("column", "row"), border = TRUE,
    gp = gpar(fill = "#CCCCCC"), ylim = NULL, outline = TRUE,
    pch = 16, size = unit(2, "mm"), axis = FALSE, axis_side = NULL,
    axis_gp = gpar(fontsize = 8), axis_direction = c("normal", "reverse"))

Arguments

x

a matrix or a list. If x is a matrix and if which is column, statistics for boxplot is calculated by columns, if which is row, the calculation is by rows.

which

is the annotation a column annotation or a row annotation?

border

whether show border of the annotation compoment

gp

graphic parameters

ylim

data ranges.

outline

whether draw outliers

pch

point type

size

point size

axis

whether add axis

axis_side

if it is placed as column annotation, value can only be "left" or "right". If it is placed as row annotation, value can only be "bottom" or "top".

axis_gp

graphic parameters for axis

axis_direction

if the annotation is row annotation, should the axis be from left to right (default) or follow the reversed direction?

Value

• A graphic function which can be set in HeatmapAnnotation constructor method.

Examples

mat = matrix(rnorm(32), nrow = 4)
f = anno_boxplot(mat)
grid.newpage(); f(1:8)

f = anno_boxplot(mat, which = "row")
grid.newpage(); f(1:4)

lt = lapply(1:4, function(i) rnorm(8))
f = anno_boxplot(lt)
grid.newpage(); f(1:4)