CoordinateCleaner (version 2.0-18)

plot.spatialvalid: Plot Method for Class Spatialvalid

Description

A set of plots to explore objects of the class spatialvalid. A plot to visualize the flags from clean_coordinates

Usage

# S3 method for spatialvalid
plot(
  x,
  lon = "decimallongitude",
  lat = "decimallatitude",
  bgmap = NULL,
  clean = TRUE,
  details = FALSE,
  pts_size = 1,
  font_size = 10,
  zoom_f = 0.1,
  ...
)

Arguments

x

an object of the class spatialvalid as from clean_coordinates.

lon

character string. The column with the longitude coordinates. Default = “decimallongitude”.

lat

character string. The column with the latitude coordinates. Default = “decimallatitude”.

bgmap

an object of the class SpatialPolygonsDataFrame used as background map. Default = ggplot::borders()

clean

logical. If TRUE, non-flagged coordinates are included in the map.

details

logical. If TRUE, occurrences are color-coded by the type of flag.

pts_size

numeric. The point size for the plot.

font_size

numeric. The font size for the legend and axes

zoom_f

numeric. the fraction by which to expand the plotting area from the occurrence records. Increase, if countries do not show up on the background map.

…

arguments to be passed to methods.

Value

A plot of the records flagged as potentially erroneous by clean_coordinates.

See Also

clean_coordinates

Examples

# NOT RUN {

exmpl <- data.frame(species = sample(letters, size = 250, replace = TRUE),
                    decimallongitude = runif(250, min = 42, max = 51),
                    decimallatitude = runif(250, min = -26, max = -11))

test <- clean_coordinates(exmpl, species = "species", 
                          tests = c("sea", "gbif", "zeros"),
                          verbose = FALSE)

summary(test)
plot(test)
# }