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Cyclops (version 1.2.0)

fitCyclopsSimulation: Fit simulated data

Description

fitCyclopsSimulation fits simulated Cyclops data using Cyclops or a standard routine. This function is useful for simulation studies comparing the performance of Cyclops when considering large, sparse datasets.

Usage

fitCyclopsSimulation(sim, useCyclops = TRUE, model = "logistic", coverage = TRUE, includePenalty = FALSE)

Arguments

sim
A simulated Cyclops dataset generated via simulateCyclopsData
useCyclops
Logical: use Cyclops or a standard routine
model
String: Fitted regression model type
coverage
Logical: report coverage statistics
includePenalty
Logical: include regularized regression penalty in computing profile likelihood based confidence intervals