newCountDataSetFromHTSeqCount


     A data frame with three or more columns. Each row describes one sample.
The first column is the sample name, the seond column the file name of
the count file generated by htseq-count, and the remaining columns are
sample meta data. If the meta data consists of only a single column
(i.e., three columns in total), this is used as 'condition' factor. 


sampleTable


The directory relative to which the filenames are specified.


Simon Anders

DESeq

Differential gene expression analysis based on the negative
binomial distribution

newCountDataSetFromHTSeqCount function

A data frame with three or more columns. Each row describes one sample.
The first column is the sample name, the seond column the file name of
the count file generated by htseq-count, and the remaining columns are
sample meta data. If the meta data consists of only a single column
(i.e., three columns in total), this is used as 'condition' factor.

The directory relative to which the filenames are specified.

newCountDataSetFromHTSeqCount: Create a new CountDataSet from count files generated with htseq-count

Description

Usage

Arguments

Value

References

See Also