DHARMa (version 0.4.7)

getObservedResponse: Get model response

Description

Extract the response of a fitted model.

Usage

getObservedResponse(object, ...)
# S3 method for default
getObservedResponse(object, ...)
# S3 method for HLfit
getObservedResponse(object, ...)
# S3 method for phylolm
getObservedResponse(object, ...)
# S3 method for phyloglm
getObservedResponse(object, ...)

Arguments

object

a fitted model.

...

additional parameters.

Author

Florian Hartig

Details

The purpose of this function is to safely extract the observed response (dependent variable) of the fitted model classes.

See Also

getRefit, getSimulations, getFixedEffects, getFitted

Examples

testData = createData(sampleSize = 400, family = gaussian())

fittedModel <- lm(observedResponse ~ Environment1 , data = testData)

# response that was used to fit the model
getObservedResponse(fittedModel)

# predictions of the model for these points
getFitted(fittedModel)

# extract simulations from the model as matrix
getSimulations(fittedModel, nsim = 2)

# extract simulations from the model for refit (often requires different structure)
x = getSimulations(fittedModel, nsim = 2, type = "refit")

getRefit(fittedModel, x[[1]])

getRefit(fittedModel, getObservedResponse(fittedModel))