Rcpp version of R code
LSRA_MCMC_sim(nits, pars, JumpCV, adapt, parLB, parUB, R0ind, inflind, slpind,
RDind, nyears, maxage, M, Mat_age, Wt_age, Chist_a, Umax, h, CAA, CAAadj,
sigmaR)number of iterations
vector of parameters
jump cv vector
adapt vector
lower bounds
upper bounds
index for R0
index for inflection
index for slope
index for recruitment deviations
number of projection years
maximum age
Natural mortality
A vector of maturity at age
A vector of weight at age
A vector of historical catch observations (nyears long) going back to unfished conditions
A numeric value representing the maximum harvest rate for any age class (rejection of sims where this occurs)
steepness of SRR
A matrix nyears (rows) by nages (columns) of catch at age (age 1 to maxage in length)
internal parameter
A numeric value representing the prior standard deviation of log space recruitment deviations