colSumsLog

rowSumsLog


     Numeric matrix of natural log transformed values.
  

logmat


  Given a matrix of log transformed values, sum the rows or columns on the untransformed scale.


 log 

DOQTL is a quantitative trait locus (QTL) mapping pipeline designed for Diversity Outbred mice and other multi-parent outbred populations. The package reads in data from genotyping arrays and perform haplotype reconstruction using a hidden Markov model (HMM). The haplotype probabilities from the HMM are then used to perform linkage mapping. When founder sequences are available, DOQTL can use the haplotype reconstructions to impute the founder sequences onto DO genomes and perform association mapping.

Daniel Gatti

DOQTL

Genotyping and QTL Mapping in DO Mice

colSumsLog function

Numeric matrix of natural log transformed values.

Given a matrix of log transformed values, sum the rows or columns on the untransformed scale.

colSumsLog: Sum columns of log transformed data.

Description

Usage

Arguments

Value

Details

See Also

Examples