convert.genes.to.GRanges


    Date.frame as returned by <code><a rd-options="" href="/link/get.mgi.features?package=DOQTL&version=1.8.0" data-mini-rdoc="DOQTL::get.mgi.features">get.mgi.features</a></code>.
  


  Given the output of <code><a rd-options="" href="/link/get.mgi.features?package=DOQTL&version=1.8.0" data-mini-rdoc="DOQTL::get.mgi.features">get.mgi.features</a></code>, convert the results to a GRanges object.


 MGI 

DOQTL is a quantitative trait locus (QTL) mapping pipeline designed for Diversity Outbred mice and other multi-parent outbred populations. The package reads in data from genotyping arrays and perform haplotype reconstruction using a hidden Markov model (HMM). The haplotype probabilities from the HMM are then used to perform linkage mapping. When founder sequences are available, DOQTL can use the haplotype reconstructions to impute the founder sequences onto DO genomes and perform association mapping.

Daniel Gatti

DOQTL

Genotyping and QTL Mapping in DO Mice

convert.genes.to.GRanges function

Date.frame as returned by <code><a href="get.mgi.features" rd-options="">get.mgi.features</a></code>.

Given the output of <code><a href="get.mgi.features" rd-options="">get.mgi.features</a></code>, convert the results to a GRanges object.

convert.genes.to.GRanges: Convert MGI genes to GRanges.

Description

Usage

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Value

Examples