convert.genotypes


     Character matrix containing A, C, G, T allele calls.
  

geno


  Convert the genotype data from A,C,G,T format to A, H, B, N.


 alleles 

DOQTL is a quantitative trait locus (QTL) mapping pipeline designed for Diversity Outbred mice and other multi-parent outbred populations. The package reads in data from genotyping arrays and perform haplotype reconstruction using a hidden Markov model (HMM). The haplotype probabilities from the HMM are then used to perform linkage mapping. When founder sequences are available, DOQTL can use the haplotype reconstructions to impute the founder sequences onto DO genomes and perform association mapping.

Daniel Gatti

DOQTL

Genotyping and QTL Mapping in DO Mice

convert.genotypes function

Character matrix containing A, C, G, T allele calls.

Convert the genotype data from A,C,G,T format to A, H, B, N.

convert.genotypes: Convert the genotype data from A,C,G,T format to A, H, B, N.

Description

Usage

Arguments

Value

Examples