convert.variants.to.GRanges


     Data frame with four header columns and SNPs in the remaining columns.
  

variants


  Given a data.frame of SNPs, convert the SNP locations to a GRanges object.


DOQTL is a quantitative trait locus (QTL) mapping pipeline designed for Diversity Outbred mice and other multi-parent outbred populations. The package reads in data from genotyping arrays and perform haplotype reconstruction using a hidden Markov model (HMM). The haplotype probabilities from the HMM are then used to perform linkage mapping. When founder sequences are available, DOQTL can use the haplotype reconstructions to impute the founder sequences onto DO genomes and perform association mapping.

Daniel Gatti

DOQTL

Genotyping and QTL Mapping in DO Mice

convert.variants.to.GRanges function

Data frame with four header columns and SNPs in the remaining columns.

Given a data.frame of SNPs, convert the SNP locations to a GRanges object.

convert.variants.to.GRanges: convert.variants.to.GRanges

Description

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