create.Rdata.files


    Character vector containing genotype probability file names.
  

prob.files


    Character string containing the type of cross. Typically "DO, "CC, "HS", or "DOF1".
  

cross


  This is used to convert the *.txt genotype probability files to *.Rdata files.


 ~kwd1 

 ~kwd2 

DOQTL is a quantitative trait locus (QTL) mapping pipeline designed for Diversity Outbred mice and other multi-parent outbred populations. The package reads in data from genotyping arrays and perform haplotype reconstruction using a hidden Markov model (HMM). The haplotype probabilities from the HMM are then used to perform linkage mapping. When founder sequences are available, DOQTL can use the haplotype reconstructions to impute the founder sequences onto DO genomes and perform association mapping.

Daniel Gatti

DOQTL

Genotyping and QTL Mapping in DO Mice

create.Rdata.files function

Character vector containing genotype probability file names.

Character string containing the type of cross. Typically "DO, "CC, "HS", or "DOF1".

This is used to convert the *.txt genotype probability files to *.Rdata files.

create.Rdata.files: Convert .txt files to .Rdata files.

Description

Usage

Arguments

Value

Examples