do.colors


  The letter codes, strain names and official colors for the DO founders.


datasets

DOQTL is a quantitative trait locus (QTL) mapping pipeline designed for Diversity Outbred mice and other multi-parent outbred populations. The package reads in data from genotyping arrays and perform haplotype reconstruction using a hidden Markov model (HMM). The haplotype probabilities from the HMM are then used to perform linkage mapping. When founder sequences are available, DOQTL can use the haplotype reconstructions to impute the founder sequences onto DO genomes and perform association mapping.

Daniel Gatti

DOQTL

Genotyping and QTL Mapping in DO Mice

do.colors function

A data frame with 8 rows and 3 columns.
  <dl>
    <dt><code>CC_Designation</code></dt><dd>a factor with levels <code>A</code> <code>B</code> <code>C</code> <code>D</code> <code>E</code> <code>FALSE</code> <code>G</code> <code>H</code></dd> <dt><code>Strain</code></dt><dd>a factor with levels <code>129S1/SvImJ</code> <code>A/J</code> <code>C57BL/6J</code> <code>CAST/EiJ</code> <code>NOD/ShiLtJ</code> <code>NZO/H1LtJ</code> <code>PWK/PhJ</code> <code>WSB/EiJ</code></dd> <dt><code>R_Color</code></dt><dd>a factor with levels <code>#00A000</code> <code>#00A0FALSE0</code> <code>#1010FALSE0</code> <code>#808080</code> <code>#9000FALSE4</code> <code>#FALSE00000</code> <code>#FALSE08080</code> <code>#FALSE0FALSE000</code></dd> </dl> 

Format

Copied from <a href="http://csbio.unc.edu/CCstatus/index.py?run=AvailableLines.information">UNC Systems Genetics Website</a>

Source

The letter codes, strain names and official colors for the DO founders.

do.colors: do.colors

Description

Usage

Arguments

Format

Source

Details

Examples