get.chr.lengths


  Using the org.Mm.eg.db package, get the chromosome lengths.


 chromosome 

DOQTL is a quantitative trait locus (QTL) mapping pipeline designed for Diversity Outbred mice and other multi-parent outbred populations. The package reads in data from genotyping arrays and perform haplotype reconstruction using a hidden Markov model (HMM). The haplotype probabilities from the HMM are then used to perform linkage mapping. When founder sequences are available, DOQTL can use the haplotype reconstructions to impute the founder sequences onto DO genomes and perform association mapping.

Daniel Gatti

DOQTL

Genotyping and QTL Mapping in DO Mice

get.chr.lengths function

Using the org.Mm.eg.db package, get the chromosome lengths.

get.chr.lengths: Get chromosome lengths for the mouse

Description

Usage

Arguments

Value

Details

Examples