DOQTL (version 1.8.0)

get.strains: get.strains

Description

Get available strain names for a set of strains from a variant file.

Usage

get.strains( file = "http://cgd.jax.org/tools/SNPtools/Build38/sanger.snps.NCBI38.txt.gz")

Arguments

file

Character, full path to the variants file to use. Default is the file at the Center for Genome Dynamics at The Jackson Laboratory.

Value

Character vector of strain names in the variant file.

Examples

  ## Not run: 
#   available.strains = get.strains()
#   strains = available.strains[c(2, 5, 8, 9, 13:15, 17)]
#   snps = get.variants(chr = 7, start = 103, end = 105, strains = strains)
#   ## End(Not run)