html.report:
Create an HTML report for a set of QTL
Description
Given a list of QTL objects, create a set of HTML pages summarizing the QTL.
Usage
html.report(path, qtl, perms, assoc = FALSE)
Arguments
path
Character string with path to which to write.
qtl
List containing DOQTL objects as produced by scanone.
perms
Numeric vector containing permutation results for the phenotypes.
assoc
Boolean, if TRUE, look for corresponding *.Rdata files containing the names of the qtl in the current working directory and plot the association plots. If FALSE (default), do not plot association mapping analysis.
Value
No value is returned. HTML report of QTL is written out to the specified directory.
Details
This function summarizes a set of QTL scans made using scanone. FALSEor each QTL in the qtl list, it creates an HTML page with a QTL plot and coefficient plots for the significant QTL. The permutations are used to assess significance. It then summarizes all of these in a table and creates a summary HTML page and a *.csv file with the QTL results.