DOQTL (version 1.8.0)

sdp.plot: Plot association mapping results.

Description

Plot the founder strain distribution patterns (SDP) of the SNPs in results.

Usage

sdp.plot(results, ...)

Arguments

results

Data.frame containing output from assoc.map.

...

Additional arguments passed to plot.

Value

Produces a plot. There is no return value.

Details

Given the output from assoc.map, plot the SDPs for the SNPs in results. This will show which strains have the minor allele at each SNP in results. You may also add this plot to the top of assoc.plot.

See Also

assoc.map, assoc.plot

Examples

  ## Not run:  
#     results = assoc.map(pheno = pheno, pheno.col = 1, probs = probs, K = K, addcovar = addcovar, 
# 	snps = snps, chr = 1, start = 40, end = 45)
#     sdp.plot(results[results[,12] > 3,])
#   ## End(Not run)