GSEA_internal

geneList

geneSets

exponent

nPerm

minimal size of each geneSet for analyzing

minGSSize

maximal size of each geneSet for analyzing

maxGSSize

pvalueCutoff

pAdjustMethod

verbose

set seed inside the function to make result reproducible. FALSE by default.

seed

USER_DATA


generic function for gene set enrichment analysis


This package implements five methods proposed by
Resnik, Schlicker, Jiang, Lin and Wang respectively
for measuring semantic similarities among DO terms and
gene products. Enrichment analyses including hypergeometric
model and gene set enrichment analysis are also implemented
for discovering disease associations of high-throughput
biological data.

GSEA_internal: GSEA_internal

Description

Usage

Arguments

Value