DOSE (version 2.10.6)

clusterSim: clusterSim

Description

semantic similarity between two gene clusters

Usage

clusterSim(cluster1, cluster2, measure = "Wang", combine = "BMA")

Arguments

cluster1

a vector of gene IDs

cluster2

another vector of gene IDs

measure

One of "Resnik", "Lin", "Rel", "Jiang" and "Wang" methods.

combine

One of "max", "average", "rcmax", "BMA" methods, for combining

Value

similarity

Details

given two gene clusters, this function calculates semantic similarity between them.

Examples

## cluster1 <- c("835", "5261","241", "994")
## cluster2 <- c("307", "308", "317", "321", "506", "540", "378", "388", "396")
## clusterSim(cluster1, cluster2, ont="MF", organism="human", measure="Wang")