geneSim

geneID1

geneID2

one of "Wang", "Resnik", "Rel", "Jiang", and "Lin".

measure

One of "max", "average", "rcmax", "BMA" methods, for combining semantic similarity scores of multiple DO terms associated with gene/protein.

combine


measuring similarities bewteen two gene vectors.


This package implements five methods proposed by
Resnik, Schlicker, Jiang, Lin and Wang respectively
for measuring semantic similarities among DO terms and
gene products. Enrichment analyses including hypergeometric
model and gene set enrichment analysis are also implemented
for discovering disease associations of high-throughput
biological data.

geneSim: geneSim

Description

Usage

Arguments

Value

Details