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DOSE (version 2.10.6)

gseDO: DO Gene Set Enrichment Analysis

Description

perform gsea analysis

Usage

gseDO(geneList, exponent = 1, nPerm = 1000, minGSSize = 10, maxGSSize = 500, pvalueCutoff = 0.05, pAdjustMethod = "BH", verbose = TRUE, seed = FALSE)

Arguments

geneList
order ranked geneList
exponent
weight of each step
nPerm
permutation numbers
minGSSize
minimal size of each geneSet for analyzing
maxGSSize
maximal size of each geneSet for analyzing
pvalueCutoff
pvalue Cutoff
pAdjustMethod
p value adjustment method
verbose
print message or not
seed
logical

Value

gseaResult object