Usage
integrate.intensity(x, dimyx=NULL, eps=NULL, se=FALSE, od=FALSE, reps=100, silent=FALSE, J.inv=NULL, showplot=TRUE)
Arguments
dimyx
number of y,x pixels
eps
height and width of pixels
se
if TRUE, compute std error of abundance and log-normal ci
od
if TRUE and se=TRUE, also compute over-dispersion corrected std error of abundance and log-normal ci
reps
number of reps for MC integration for over-dispersion correction
silent
if FALSE, show progress on MC integration
J.inv
var-cov matrix from fitted model
showplot
if TRUE show Poisson and empirical and fitted K-functions