estimate.cell.sizes

The proportion of cells a gene must be expressed in to be
considered for cell size estimation

cell.prop

The threshold above which we consider a gene to be expressed

expr.threshold

Estimate the cell sizes by considering the cells at each
capture time separately

by.capture

Estimate the cell sizes. We only consider genes that are expressed in
a certain proportion of cells.

Implements the DeLorean model (Reid & Wernisch (2016)
<doi:10.1093/bioinformatics/btw372>) to estimate pseudotimes for
single cell expression data. The DeLorean model uses a Gaussian process
latent variable model to model uncertainty in the capture time of
cross-sectional data.

estimate.cell.sizes: Estimate the cell sizes. We only consider genes that are expressed in a certain proportion of cells.

Description

Usage

Arguments