Learn R Programming

DeLorean (version 1.5.0)

estimate.cell.sizes: Estimate the cell sizes. We only consider genes that are expressed in a certain proportion of cells.

Description

Estimate the cell sizes. We only consider genes that are expressed in a certain proportion of cells.

Usage

estimate.cell.sizes(dl, cell.prop = 0.5, expr.threshold = 0,
  by.capture = TRUE)

Arguments

dl

de.lorean object.

cell.prop

The proportion of cells a gene must be expressed in to be considered for cell size estimation

expr.threshold

The threshold above which we consider a gene to be expressed

by.capture

Estimate the cell sizes by considering the cells at each capture time separately