DeLorean (version 1.5.0)

find.smooth.tau: Find best order of the samples assuming some smooth GP prior on the expression profiles over this ordering.

Description

Find best order of the samples assuming some smooth GP prior on the expression profiles over this ordering.

Usage

find.smooth.tau(dl, psi = exp(dl$hyper$mu_psi),
  omega = exp(dl$hyper$mu_omega), num.cores = default.num.cores(),
  num.tau.to.try = num.cores, num.tau.to.keep = num.cores,
  method = "metropolis", ...)

Arguments

dl

de.lorean object

psi

Temporal variation

omega

Noise

num.cores

Number of cores to run on. Defaults to default.num.cores()

num.tau.to.try

How many initialisations to try

num.tau.to.keep

How many initialisations to keep

method

Method to use "maximise" or "metropolis"

...

Extra arguments to method