fit.held.out

The expression matrix including the held out genes

expr.held.out

The sample to use to fit with
Calculate covariance over pseudotimes and capture times
Evaluate the held out gene under the GP model using pseudotimes
and a model without.

sample.iter

Implements the DeLorean model (Reid & Wernisch (2016)
<doi:10.1093/bioinformatics/btw372>) to estimate pseudotimes for
single cell expression data. The DeLorean model uses a Gaussian process
latent variable model to model uncertainty in the capture time of
cross-sectional data.

fit.held.out: Fit held out genes

Description

Usage

Arguments