fit.model

Fitting method:<ul>
<li>'sample': Use a Stan sampler.
 See <code><a rd-options="" href="/link/fit.model.sample?package=DeLorean&version=1.5.0" data-mini-rdoc="DeLorean::fit.model.sample">fit.model.sample</a></code>.</li>
<li>'vb': Use Stan ADVI variational Bayes algorithm.
 See <code><a rd-options="" href="/link/fit.model.vb?package=DeLorean&version=1.5.0" data-mini-rdoc="DeLorean::fit.model.vb">fit.model.vb</a></code>.</li>
</ul>

method

Fit the model using specified method (sampling or variational Bayes).

Implements the DeLorean model (Reid & Wernisch (2016)
<doi:10.1093/bioinformatics/btw372>) to estimate pseudotimes for
single cell expression data. The DeLorean model uses a Gaussian process
latent variable model to model uncertainty in the capture time of
cross-sectional data.

John Reid

DeLorean

Estimates Pseudotimes for Single Cell Expression Data

fit.model function

Fitting method:<ul>
<li>'sample': Use a Stan sampler.
 See <code><a rd-options='' href='fit.model.sample'>fit.model.sample</a></code>.</li>
<li>'vb': Use Stan ADVI variational Bayes algorithm.
 See <code><a rd-options='' href='fit.model.vb'>fit.model.vb</a></code>.</li>
</ul>

fit.model: Fit the model using specified method (sampling or variational Bayes).

Description

Usage

Arguments