fit.model.sample

Number of cores to run on.
Defaults to getOption("DL.num.cores", max(parallel::detectCores()-1, 1))

num.cores

Number of chains to run on each core

chains

How many samples to generate before retaining one

thin

Extra arguments for rstan::stan() sampling call

Implements the DeLorean model (Reid & Wernisch (2016)
<doi:10.1093/bioinformatics/btw372>) to estimate pseudotimes for
single cell expression data. The DeLorean model uses a Gaussian process
latent variable model to model uncertainty in the capture time of
cross-sectional data.

fit.model.sample: Fit the model using Stan sampler

Description

Usage

Arguments