fit.model.vb

Number of cores to run on. Defaults to default.num.cores()

num.cores

Number initialisations to try. Defaults to num.cores

num.inits

Which initialisation to use if only using one

init.idx

Fit the model using Stan variational Bayes

Implements the DeLorean model (Reid & Wernisch (2016)
<doi:10.1093/bioinformatics/btw372>) to estimate pseudotimes for
single cell expression data. The DeLorean model uses a Gaussian process
latent variable model to model uncertainty in the capture time of
cross-sectional data.

fit.model.vb: Fit the model using Stan variational Bayes

Description

Usage

Arguments