optimise.best.sample

sample.to.opt

new.best.sample

<p>Optimise the best sample and update the best.sample index.</p>

Implements the DeLorean model (Reid & Wernisch (2016)
<doi:10.1093/bioinformatics/btw372>) to estimate pseudotimes for
single cell expression data. The DeLorean model uses a Gaussian process
latent variable model to model uncertainty in the capture time of
cross-sectional data.

John Reid

optimise.best.sample: Optimise the best sample and update the best.sample index.

Description

Usage

Arguments